Congratulations, Dr. Trgovec-Greif!
CUBE
Lovro Trgovec-Greif successfully defended his PhD thesis "Virus bioinformatics and phage-bacteria interactions".
Division of Computational Systems Biology
Centre for Microbiology and Environmental Systems Science
About CUBE
The Division of Computational Systems Biology | CUBE at the Centre for Microbiology and Environmental Systems Science | CeMESS is a group of bioinformaticians and computational biologists. CUBE focuses on understanding biological systems, ranging from single species to multi-species systems and ecosystems.
Our research is based on data from large-scale bioanalytical methods. Researchers in our group develop, improve and apply computational methods for the interpretation of molecular information in biology. We establish and analyse quantitative mathematical models.
CeMESS/Maximilian Prag
Congratulations, Dr. Sango!
CUBE
Roko Sango defended his PhD thesis "Computational metabolic modelling and multi-omics analysis of bone-marrow derived and tissue-resident macrophages"…
Congratulations, Dr. Predl
CUBE
Michael Predl defended his PhD thesis "Prediction of cross-feeding interactions in microbial communities using metabolic modelling" with very good…
Austrian Bioinformatics Workshop 2024, July 3 in Graz
CUBE
CUBE, the Center for Medical Research (ZMF) of the Medical University of Graz and the Austrian Bioinformatics Platform welcome you to Graz to…
We are hiring: ELIXIR Austria node coordinator
CUBE
We are searching for a highly motivated person (m/f/d) with professional experience in the coordination of research infrastructures for the position…
Welcome Nick!
CUBE
We're happy to announce that CUBies are strenghtening in numbers!
Life Science Compute Cluster
We operate and administer Life Science Compute Cluster (LiSC), a specialized high-performance computing infrastructure which is available to life scientists across the University of Vienna.
Recent Publications
2023
Blanco-Míguez A, Beghini F, Cumbo F, McIver LJ, Thompson KN, Zolfo M et al. Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4. Nature Biotechnology. 2023 Nov;41(11):1633-1644. Epub 2023 Feb 23. doi: 10.1038/s41587-023-01688-w
Valles-Colomer M, Blanco-Míguez A, Manghi P, Asnicar F, Dubois L, Golzato D et al. The person-to-person transmission landscape of the gut and oral microbiomes. Nature. 2023 Feb 2;614(7946):125-135. doi: 10.1038/s41586-022-05620-1
2021
Sarhan MS, Lehmkuhl A, Straub R, Tett AJ, Wieland G, Franken M et al. Ancient DNA diffuses from human bones to cave stones. Iscience. 2021 Dec 17;24(12):103397. 103397. Epub 2021 Nov 23. doi: 10.1016/j.isci.2021.103397
Maixner F, Sarhan MS, Huang KD, Tett A, Schoenafinger A, Zingale S et al. Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period. Current Biology. 2021 Dec 6;31(23):5149-5162. Epub 2021 Oct 13. doi: 10.1016/j.cub.2021.09.031
Granehall L, Huang KD, Tett A, Manghi P, Paladin A, O'Sullivan N et al. Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter. Microbiome. 2021 Sept 30;9(1):197. doi: 10.1186/s40168-021-01132-8
Centre for Microbiology and Environmental Systems Science
University of Vienna
CeMESS/Maximilian Prag