Univ. Prof. Dr. Thomas Rattei

 

 

 

 

 

Head of the Division of Computational Systems Biology
Vice-head of the Department of Microbiology and Ecosystem Science

☎ +43 1 4277 91280

thomas.rattei@univie.ac.at 

Thomas Rattei’s work covers a wide spectrum of topics from bioinformatics, genome and metagenome analysis and systems biology. He has long-standing expertise in developing and applying computational methods for the interpretation of large-scale sequence information. The international reputation of his research group triggered their involvement in numerous international (meta-) genome sequencing and analysis consortia.

Thomas’ research activities not only cover individual, project-specific questions but also general problems in bioinformatics, computational infrastructure, and large-scale biological databases. Furthermore, his group develops novel, genome-based computational approaches for studying molecular inter-species interactions, such as between hosts and pathogens, between symbionts, or in microbial ecosystems.

Thomas and his team maintain and develop internationally relevant resources in computational biology, such as the web portals phendb.org, vogdb.org and effectivedb.org for microbial trait prediction, virus orthologous groups and protein families, and bacterial secreted proteins and secretion systems.

Links

Teaching

To explore Thomas' teaching activities at the University of Vienna, visit u:find.

Join the Team

If you are interested in joining the lab, explore open positions here or email Thomas directly.

Group Members

  • Michael Neumayer
  • Alexander Pfundner
  • Michael Predl
  • Roko Sango
  • Lovro Trgovec-Greif

 Publications

Moeller FU, Webster NS, Herbold CW, Behnam F, Domman D, Albertsen M et al. Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta. Environmental Microbiology. 2019 Oct;21(10):3831-3854. doi: 10.1111/1462-2920.14732

Steiner PA, Mena C, De Corte D, Geijo J, Yokokawa T, Rattei T et al. Highly variable mRNA half-life time within marine bacterial taxa and functional genes. Environmental Microbiology. 2019 Oct;21(10):3873-3884. Epub 2019 Jul 12. doi: 10.1111/1462-2920.14737

Laffy PW, Botté ES, Wood-Charlson EM, Weynberg KD, Rattei T, Webster NS. Thermal stress modifies the marine sponge virome. Environmental Microbiology Reports. 2019 Oct;11(5):690-698. Epub 2019 Jul 8. doi: 10.1111/1758-2229.12782

Dos Santos-Pinto JRA, Esteves FG, Sialana FJ, Ferro M, Smidak R, Rares LC et al. A proteotranscriptomic study of silk-producing glands from the orb-weaving spiders. Molecular Omics. 2019 Aug 5;15(4):256-270. doi: 10.1039/c9mo00087a

Sialana FJ, Ribeiroda Silva Menegasso A, Smidak R, Hussein AM, Zavadil M, Rattei T et al. Proteome Changes Paralleling the Olfactory Conditioning in the Forager Honey Bee and Provision of a Brain Proteomics Dataset. Proteomics. 2019 Jul;19(13):e1900094. doi: 10.1002/pmic.201900094

Kiening M, Ochsenreiter R, Hellinger H-J, Rattei T, Hofacker I, Frishman D. Conserved Secondary Structures in Viral mRNAs. Viruses. 2019 Apr 29;11(5):401. doi: 10.3390/v11050401

Felkel S, Vogl C, Rigler D, Dobretsberger V, Chowdhary BP, Distl O et al. The horse Y chromosome as an informative marker for tracing sire lines. Scientific Reports. 2019 Apr 15;9(1):6095. doi: 10.1038/s41598-019-42640-w

Mahnert A, Moissl-Eichinger C, Zojer M, Bogumil D, Mizrahi I, Rattei T et al. Man-made microbial resistances in built environments. Nature Communications. 2019 Feb 27;10(1):968. doi: 10.1038/s41467-019-08864-0

Hausmann B, Pelikan C, Rattei T, Loy A, Pester M. Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member. mBio. 2019 Feb 12;10(1):e02189-18. doi: 10.1128/mBio.02189-18

Wally N, Schneider M, Thannesberger J, Kastner MT, Bakonyi T, Indik S et al. Plasmid DNA contaminant in molecular reagents. Scientific Reports. 2019 Feb 7;9(1):1652. doi: 10.1038/s41598-019-38733-1