Univ. Prof. Dr. Thomas Rattei

 

 

 

 

 

Head of the Division of Computational Systems Biology
Vice-head of the Department of Microbiology and Ecosystem Science

☎ +43 1 4277 91280

thomas.rattei@univie.ac.at 

Thomas Rattei’s work covers a wide spectrum of topics from bioinformatics, genome and metagenome analysis and systems biology. He has long-standing expertise in developing and applying computational methods for the interpretation of large-scale sequence information. The international reputation of his research group triggered their involvement in numerous international (meta-) genome sequencing and analysis consortia.

Thomas’ research activities not only cover individual, project-specific questions but also general problems in bioinformatics, computational infrastructure, and large-scale biological databases. Furthermore, his group develops novel, genome-based computational approaches for studying molecular inter-species interactions, such as between hosts and pathogens, between symbionts, or in microbial ecosystems.

Thomas and his team maintain and develop internationally relevant resources in computational biology, such as the web portals phendb.org, vogdb.org and effectivedb.org for microbial trait prediction, virus orthologous groups and protein families, and bacterial secreted proteins and secretion systems.

Links

Teaching

To explore Thomas' teaching activities at the University of Vienna, visit u:find.

Join the Team

If you are interested in joining the lab, explore open positions here or email Thomas directly.

Group Members

  • Michael Neumayer
  • Alexander Pfundner
  • Michael Predl
  • Roko Sango
  • Lovro Trgovec-Greif

 Publications

Maixner F, Turaev D, Cazenave-Gassiot A, Janko M, Krause-Kyora B, Hoopmann MR et al. The Iceman's Last Meal Consisted of Fat, Wild Meat, and Cereals. Current Biology. 2018 Jul 23;28(14):2348-2355.e9. doi: 10.1016/j.cub.2018.05.067

Genome Standards Consortium, Schirmi L, Banfield JF, Hugenholtz P, Woyke T. Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 2018 Jul 6;36(7):660-660. 660. doi: 10.1038/nbt0718-660a

Hausmann B, Pelikan C, Herbold CW, Köstlbacher S, Albertsen M, Eichorst SA et al. Peatland Acidobacteria with a dissimilatory sulfur metabolism. The ISME Journal: multidisciplinary journal of microbial ecology. 2018 Jul;12(7):1729–1742. Epub 2018 Feb 23. doi: 10.1038/s41396-018-0077-1

Laffy PW, Wood-Charlson EM, Turaev D, Jutz S, Pascelli C, Botté ES et al. Reef invertebrate viromics: diversity, host specificity and functional capacity. Environmental Microbiology. 2018 Jun;20(6):2125-2141. doi: 10.1111/1462-2920.14110

Haselmair-Gosch C, Miosic S, Nitarska D, Roth BL, Walliser B, Paltram R et al. Great Cause-Small Effect: Undeclared Genetically Engineered Orange Petunias Harbor an Inefficient Dihydroflavonol 4-Reductase. Frontiers in Plant Science. 2018 Feb 28;9:149. doi: 10.3389/fpls.2018.00149

Felkel S, Vogl C, Rigler D, Jagannathan V, Leeb T, Fries R et al. Asian horses deepen the MSY phylogeny. Animal genetics. 2018 Feb;49(1):90-93. doi: 10.1111/age.12635

Shima K, Wanker M, Skilton RJ, Cutcliffe LT, Schnee C, Kohl TA et al. The Genetic Transformation of Chlamydia pneumoniae. mSphere. 2018;3(5):e00412-18. doi: 10.1128/mSphere.00412-18

Käding N, Kaufhold I, Müller C, Szaszák M, Shima K, Weinmaier T et al. Growth of Chlamydia pneumoniae Is Enhanced in Cell swith Impaired Mitochondrial Function. Frontiers in Cellular and Infection Microbiology. 2017 Dec 5;7:499. doi: 10.3389/fcimb.2017.00499