Univ. Prof. Dr. Thomas Rattei

 

 

 

 

 

Head of the Division of Computational Systems Biology
Vice-head of the Department of Microbiology and Ecosystem Science

☎ +43 1 4277 91280

thomas.rattei@univie.ac.at 

Thomas Rattei’s work covers a wide spectrum of topics from bioinformatics, genome and metagenome analysis and systems biology. He has long-standing expertise in developing and applying computational methods for the interpretation of large-scale sequence information. The international reputation of his research group triggered their involvement in numerous international (meta-) genome sequencing and analysis consortia.

Thomas’ research activities not only cover individual, project-specific questions but also general problems in bioinformatics, computational infrastructure, and large-scale biological databases. Furthermore, his group develops novel, genome-based computational approaches for studying molecular inter-species interactions, such as between hosts and pathogens, between symbionts, or in microbial ecosystems.

Thomas and his team maintain and develop internationally relevant resources in computational biology, such as the web portals phendb.org, vogdb.org and effectivedb.org for microbial trait prediction, virus orthologous groups and protein families, and bacterial secreted proteins and secretion systems.

Links

Teaching

To explore Thomas' teaching activities at the University of Vienna, visit u:find.

Join the Team

If you are interested in joining the lab, explore open positions here or email Thomas directly.

Group Members

  • Michael Neumayer
  • Alexander Pfundner
  • Michael Predl
  • Roko Sango
  • Lovro Trgovec-Greif

 Publications

Weinmaier T, Riesing M, Rattei T, Bille J, Arguedas-Villa C, Stephan R et al. Complete Genome Sequence of Listeria monocytogenes LL195, a Serotype 4b Strain from the 1983-1987 Listeriosis Epidemic in Switzerland. Genome Announcements. 2013 Jan;1(1):e00152-12. doi: 10.1128/genomeA.00152-12

Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N et al. Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling. Genome Biology. 2013;14(2):11. doi: 10.1186/gb-2013-14-2-r11

Hochwind K, Weinmaier T, Schmid M, van Hemert S, Hartmann A, Rattei T et al. Draft genome sequence of Lactobacillus casei W56. Journal of Bacteriology. 2012 Dec;194(23):6638. doi: 10.1128/JB.01386-12

Radax R, Rattei T, Lanzen A, Bayer C, Rapp HT, Urich T et al. Metatranscriptomics of the marine sponge Geodia barretti: tackling phylogeny and function of its microbial community. Environmental Microbiology. 2012;14(5):1308-1324. doi: 10.1111/j.1462-2920.2012.02714.x

Mattila M, Somervuo P, Rattei T, Korkeala H, Stephan R, Tasara T. Phenotypic and transcriptomic analyses of Sigma L-dependent characteristics in Listeria monocytogenes EGD-e. Food Microbiology. 2012;32(1):152-164. doi: 10.1016/j.fm.2012.05.005

Spang A, Poehlein A, Offre P, Zumbragel S, Haider S, Rychlik N et al. The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations. Environmental Microbiology. 2012;14(12):3122-3145. doi: 10.1111/j.1462-2920.2012.02893.x