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Showing entries 101 - 120 out of 167
2016
Laffy PW, Wood-Charlson EM, Turaev D, Weynberg KD, Botté ES, van Oppen MJH et al. HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts. Frontiers in Microbiology. 2016;7:822. doi: 10.3389/fmicb.2016.00822
Greuter D, Loy A, Horn M, Rattei T. probeBase-an online resource for rRNA-targeted oligonucleotide probes and primers: New features 2016. Nucleic Acids Research. 2016;44(D1):D586-D589. Epub 2015 Nov 19. doi: 10.1093/nar/gkv1232
2015
Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M et al. Complete nitrification by Nitrospira bacteria. Nature. 2015 Dec 24;528(7583):504–509. doi: 10.1038/nature16461
Weinmaier T, Probst AJ, La Duc MT, Ciobanu D, Cheng JF, Ivanova N et al. A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses. Microbiome. 2015 Dec 8;3:62. 62. doi: 10.1186/s40168-015-0129-y
Feldbauer R, Schulz F, Horn M, Rattei T. Prediction of microbial phenotypes based on comparative genomics. BMC Bioinformatics. 2015 Oct 2;16 (14):S1. doi: 10.1186/1471-2105-16-S14-S1
Muller C, Cacaci M, Sauvageot N, Sanguinetti M, Rattei T, Eder T et al. The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice. PLoS ONE. 2015 May 15;10(5):e0126143. e0126143. doi: 10.1371/journal.pone.0126143
Sheibani-Tezerji R, Naveed M, Jehl MA, Sessitsch A, Rattei T, Mitter B. The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements. Frontiers in Microbiology. 2015 May 12;6:440. 440. doi: 10.3389/fmicb.2015.00440
Stempfhuber B, Engel M, Fischer D, Neskovic-Prit G, Wubet T, Schoening I et al. pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils. Microbial Ecology: an international journal. 2015 May;69(4):879-883. Epub 2014 Dec 12. doi: 10.1007/s00248-014-0548-5
Müller A, Kjeldsen KU, Rattei T, Pester M, Loy A. Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases. The ISME Journal: multidisciplinary journal of microbial ecology. 2015 May;9(5):1152-1165. Epub 2014 Oct 24. doi: 10.1038/ismej.2014.208
Weinmaier T, Hoser J, Eck S, Kaufhold I, Shima K, Strom TM et al. Genomic factors related to tissue tropism in Chlamydia pneumoniae infection. BMC Genomics. 2015 Apr 7;16:268. doi: 10.1186/s12864-015-1377-8
Gruber-Dorninger C, Pester M, Kitzinger K, Savio DF, Loy A, Rattei T et al. Functionally relevant diversity of closely related Nitrospira in activated sludge. The ISME Journal: multidisciplinary journal of microbial ecology. 2015 Mar 1;9:643-655. doi: 10.1038/ismej.2014.156
Sana TG, Baumann C, Merdes A, Soscia C, Rattei T, Hachani A et al. Internalization of Pseudomonas aeruginosa Strain PAO1 into Epithelial Cells Is Promoted by Interaction of a T6SS Effector with the Microtubule Network. mBio. 2015;6(3):e00712-15. doi: 10.1128/mBio.00712-15
Sheibani-Tezerji R, Rattei T, Sessitsch A, Trognitz F, Mitter B. Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress. mBio. 2015;6(5):1-11. e00621-15. doi: 10.1128/mBio.00621-15
2014
Domman D, Collingro A, Lagkouvardos I, Gehre L, Weinmaier T, Rattei T et al. Massive Expansion of Ubiquitination-Related Gene Families within the Chlamydiae. Molecular Biology and Evolution. 2014 Nov;31(11):2890-2904. doi: 10.1093/molbev/msu227
Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S et al. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environmental Microbiology. 2014 Oct;16(10):3055-3071. Epub 2013 Nov 8. doi: 10.1111/1462-2920.12300
Janezic S, Indra A, Rattei T, Weinmaier T, Rupnik M. Recombination Drives Evolution of the Clostridium difficile 16S-23S rRNA Intergenic Spacer Region. PLoS ONE. 2014 Sept 15;9(9):e106545. e106545. doi: 10.1371/journal.pone.0106545
Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B et al. A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes. PLoS ONE. 2014 Sept 10;9(9):e106707. e106707. doi: 10.1371/journal.pone.0106707
Kirchner S, Weinmaier T, Rattei T, Sattmann H, Kruckenhauser L. Characterization of 19 new microsatellite loci for the Omani barb Garra barreimiae from 454 sequences. BMC research notes. 2014 Aug 12;7(1):522. 522. doi: 10.1186/1756-0500-7-522
Marz M, Beerenwinkel N, Drosten C, Fricke M, Frishman D, Hofacker IL et al. Challenges in RNA virus bioinformatics. Bioinformatics. 2014 Jul 1;30(13):1793-1799. doi: 10.1093/bioinformatics/btu105
Walker A, Pfitzner B, Neschen S, Kahle M, Harir M, Lucio M et al. Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet. The ISME Journal: multidisciplinary journal of microbial ecology. 2014 Jun 6;8(12):2380–2396. doi: 10.1038/ismej.2014.79
Showing entries 101 - 120 out of 167