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Showing entries 81 - 100 out of 162

2017

Loy A, Pfann C, Steinberger M, Hanson B, Herp S, Brugiroux S et al. Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota. mSystems. 2017 Feb 9;2(1):00171-16. doi: 10.1128/mSystems.00171-16
Di Giglio MG, Muttenthaler M, Harpsøe K, Liutkeviciute Z, Keov P, Eder T et al. Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide. Scientific Reports. 2017 Feb 1;7:41002. doi: 10.1038/srep41002
Sato Y, Ling EYS, Turaev D, Laffy P, Weynberg KD, Rattei T et al. Unraveling the microbial processes of black band disease in corals through integrated genomics. Scientific Reports. 2017 Jan 17;7:40455. doi: 10.1038/srep40455
Weynberg KD, Laffy PW, Wood-Charlson EM, Turaev D, Rattei T, Webster NS et al. Coral-associated viral communities show high levels of diversity and host auxiliary functions. PeerJ. 2017;5:e4054. doi: 10.7717/peerj.4054
Capel E, Barnier J-P, Zomer AL, Bole-Feysot C, Nussbaumer T, Jamet A et al. Peripheral blood vessels are a niche for blood-borne meningococci. Virulence. 2017;8(8):1808–1819. Epub 2017 Nov 27. doi: 10.1080/21505594.2017.1391446

2016

Diesner SC, Bergmayr C, Pfitzner B, Assmann V, Krishnamurthy D, Starkl P et al. A distinct microbiota composition is associated with protection from food allergy in an oral mouse immunization model. Clinical Immunology. 2016 Dec;173:10–18. doi: 10.1016/j.clim.2016.10.009
Eder T, Grebien F, Rattei T. NVT: a fast and simple tool for the assessment of RNA-Seq normalization strategies. Bioinformatics. 2016 Aug 11;32(23):3682-3684. doi: 10.1093/bioinformatics/btw521
Weinmaier T, Platzer A, Frank J, Hellinger H-J, Tischler P, Rattei T. ConsPred - a rule-based (re-)annotation framework for prokaryotic genomes. Bioinformatics. 2016 Jul 4;32(21):3327-3329. doi: 10.1093/bioinformatics/btw393
Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B et al. Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies. Biotechnology for Biofuels. 2016 Jun 7;9:121. 121. doi: 10.1186/s13068-016-0534-x
Turaev D, Rattei T. High definition for systems biology of microbial communities: metagenomics gets genome-centric and strain-resolved. Current Opinion in Biotechnology. 2016 Jun;39:174-181. doi: 10.1016/j.copbio.2016.04.011
Bulat T, Smidak R, Sialana FJ, Jung G, Rattei T, Bilban M et al. Transcriptomic and Proteomic Analysis of Arion vulgaris-Proteins for Probably Successful Survival Strategies? PLoS ONE. 2016 Mar;11(3):e0150614. doi: 10.1371/journal.pone.0150614
Maixner F, Krause-Kyora B, Turaev D, Herbig A, Hoopmann MR, Hallows JL et al. The 5300-year-old Helicobacter pylori genome of the Iceman. Science. 2016 Jan 8;351(6269):162-165. doi: 10.1126/science.aad2545
Eichinger V, Nussbaumer T, Platzer A, Jehl M-A, Arnold R, Rattei T. EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. Nucleic Acids Research. 2016 Jan 4;44(D1):D669–D674. doi: 10.1093/nar/gkv1269
Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC et al. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Research. 2016 Jan 4;44(D1):D286–D293. doi: 10.1093/nar/gkv1248
Capel E, Zomer AL, Nussbaumer T, Bole C, Izac B, Frapy E et al. Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization. mBio. 2016;7(4):e01173-16. doi: 10.1128/mBio.01173-16
Laffy PW, Wood-Charlson EM, Turaev D, Weynberg KD, Botté ES, van Oppen MJH et al. HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts. Frontiers in Microbiology. 2016;7:822. doi: 10.3389/fmicb.2016.00822
Greuter D, Loy A, Horn M, Rattei T. probeBase-an online resource for rRNA-targeted oligonucleotide probes and primers: New features 2016. Nucleic Acids Research. 2016;44(D1):D586-D589. Epub 2015 Nov 19. doi: 10.1093/nar/gkv1232

2015

Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M et al. Complete nitrification by Nitrospira bacteria. Nature. 2015 Dec 24;528(7583):504–509. doi: 10.1038/nature16461
Weinmaier T, Probst AJ, La Duc MT, Ciobanu D, Cheng J-F, Ivanova N et al. A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses. Microbiome. 2015 Dec 8;3:62. 62. doi: 10.1186/s40168-015-0129-y
Feldbauer R, Schulz F, Horn M, Rattei T. Prediction of microbial phenotypes based on comparative genomics. BMC Bioinformatics. 2015 Oct 2;16 (14):S1. doi: 10.1186/1471-2105-16-S14-S1
Showing entries 81 - 100 out of 162