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Showing entries 21 - 40 out of 160

2022


Bernard C, Locard-Paulet M, Noël C, Duchateau M, Giai Gianetto Q, Moumen B et al. A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment. Nature Communications. 2022 Jul 14;13(1):4104. doi: 10.1038/s41467-022-31832-0

2021


Sarhan MS, Lehmkuhl A, Straub R, Tett AJ, Wieland G, Franken M et al. Ancient DNA diffuses from human bones to cave stones. Iscience. 2021 Dec 17;24(12):103397. 103397. Epub 2021 Nov 23. doi: 10.1016/j.isci.2021.103397

Maixner F, Sarhan MS, Huang KD, Tett A, Schoenafinger A, Zingale S et al. Hallstatt miners consumed blue cheese and beer during the Iron Age and retained a non-Westernized gut microbiome until the Baroque period. Current Biology. 2021 Dec 6;31(23):5149-5162. Epub 2021 Oct 13. doi: 10.1016/j.cub.2021.09.031

Majek P, Lueftinger L, Beisken S, Rattei T, Materna A. Genome-Wide Mutation Scoring for Machine-Learning-Based Antimicrobial Resistance Prediction. International Journal of Molecular Sciences. 2021 Dec 2;22(23):13049. doi: 10.3390/ijms222313049

Flieder M, Buongiorno J, Herbold CW, Hausmann B, Rattei T, Lloyd KG et al. Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. The ISME Journal. 2021 Nov 1;15(11):3159-3180. Epub 2021 May 12. doi: 10.1038/s41396-021-00992-0

Granehall L, Huang KD, Tett A, Manghi P, Paladin A, O'Sullivan N et al. Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter. Microbiome. 2021 Sep 30;9(1):197. doi: 10.1186/s40168-021-01132-8

Tett A, Pasolli E, Masetti G, Ercolini D, Segata N. Prevotella diversity, niches and interactions with the human host. Nature Reviews. Microbiology. 2021 Sep 1;19(9):585–599. Epub 2021 May 28. doi: 10.1038/s41579-021-00559-y

Hanson BT, Dimitri Kits K, Löffler J, Burrichter AG, Fiedler A, Denger K et al. Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut. The ISME Journal. 2021 Sep 1;15(9):2779-2791. Epub 2021 Mar 31. doi: 10.1038/s41396-021-00968-0

Lueftinger L, Ferreira I, Frank BJH, Beisken S, Weinberger J, von Haeseler A et al. Predictive Antibiotic Susceptibility Testing by Next-Generation Sequencing for Periprosthetic Joint Infections: Potential and Limitations. Biomedicines. 2021 Jul 29;9(8):910. doi: 10.3390/biomedicines9080910

Wasmund K, Pelikan C, Schintlmeister A, Wagner M, Watzka M, Richter A et al. Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments. Nature Microbiology. 2021 Jul;6(7):885-898. Epub 2021 Jun 14. doi: 10.1038/s41564-021-00917-9

Gerner SM, Graf AB, Rattei T. Tamock: simulation of habitat-specific benchmark data in metagenomics. BMC Bioinformatics. 2021 May 1;22(1):227. Epub 2021 May 1. doi: 10.1186/s12859-021-04154-z

Walliser B, Lucaciu CR, Molitor C, Marinovic S, Nitarska DA, Aktas D et al. Dahlia variabilis cultivar 'Seattle' as a model plant for anthochlor biosynthesis. Plant Physiology and Biochemistry. 2021 Feb;159:193-201. Epub 2020 Dec 17. doi: 10.1016/j.plaphy.2020.12.016

2020


Feldbauer R, Gosch L, Lüftinger L, Hyden P, Flexer A, Rattei T. DeepNOG: Fast and accurate protein orthologous group assignment. Bioinformatics. 2020 Dec 1;36(22-23):5304-5312. doi: 10.1093/bioinformatics/btaa1051

Pascelli C, Laffy PW, Botté E, Kupresanin M, Rattei T, Lurgi M et al. Viral ecogenomics across the Porifera. Microbiome. 2020 Oct 2;8(1):144. Epub 2020 Oct 2. doi: 10.1186/s40168-020-00919-5

Herrera P, Schuster L, Wentrup C, König L, Kempinger T, Na H et al. Molecular causes of an evolutionary shift along the parasitism-mutualism continuum in a bacterial symbiont. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 2020 Sep 1;117(35):21658-21666. Epub 2020 Aug 19. doi: 10.1073/pnas.2005536117

Esteves FG, Dos Santos-Pinto JRA, Ferro M, Sialana FJ, Smidak R, Rares LC et al. Revealing the Venomous Secrets of the Spider's Web. Journal of Proteome Research. 2020 Aug 7;19(8):3044-3059. doi: 10.1021/acs.jproteome.0c00086

Reider SJ, Moosmang S, Tragust J, Trgovec-Greif L, Tragust S, Perschy L et al. Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota-Results from the PAGODA Trial. Nutrients. 2020 Apr 28;12(5):1257. doi: 10.3390/nu12051257

Feldbauer R, Rattei T, Flexer A. scikit-hubness: Hubness Reduction and Approximate Neighbor Search. Journal of Open Source Software. 2020 Jan 17;5(45):1957. doi: 10.21105/joss.01957

Showing entries 21 - 40 out of 160