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Showing entries 81 - 100 out of 166

2017

Walker A, Pfitzner B, Harir M, Schaubeck M, Calasan J, Heinzmann SS et al. Sulfonolipids as novel metabolite markers of Alistipes and Odoribacter affected by high-fat diets. Scientific Reports. 2017 Sept 8;7:11047. doi: 10.1038/s41598-017-10369-z
Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK et al. Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea. Nature Biotechnology. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893
Thannesberger J, Hellinger HJ, Klymiuk I, Kastner MT, Rieder FJJ, Schneider M et al. Viruses comprise an extensive pool of mobile genetic elements in eukaryote cell cultures and human clinical samples. The FASEB Journal. 2017 May 1;31(5):1987-2000. Epub 2017 Feb 8. doi: 10.1096/fj.201601168R
Zojer M, Schuster LN, Schulz F, Pfundner A, Horn M, Rattei T. Variant profiling of evolving prokaryotic populations. PeerJ. 2017 Feb 16;5:e2997. doi: 10.7717/peerj.2997
Loy A, Pfann C, Steinberger M, Hanson B, Herp S, Brugiroux S et al. Lifestyle and Horizontal Gene Transfer-Mediated Evolution of Mucispirillum schaedleri, a Core Member of the Murine Gut Microbiota. mSystems. 2017 Feb 9;2(1):00171-16. doi: 10.1128/mSystems.00171-16
Di Giglio MG, Muttenthaler M, Harpsøe K, Liutkeviciute Z, Keov P, Eder T et al. Development of a human vasopressin V1a-receptor antagonist from an evolutionary-related insect neuropeptide. Scientific Reports. 2017 Feb 1;7:41002. doi: 10.1038/srep41002
Sato Y, Ling EYS, Turaev D, Laffy P, Weynberg KD, Rattei T et al. Unraveling the microbial processes of black band disease in corals through integrated genomics. Scientific Reports. 2017 Jan 17;7:40455. doi: 10.1038/srep40455
Weynberg KD, Laffy PW, Wood-Charlson EM, Turaev D, Rattei T, Webster NS et al. Coral-associated viral communities show high levels of diversity and host auxiliary functions. PeerJ. 2017;5:e4054. doi: 10.7717/peerj.4054
Capel E, Barnier JP, Zomer AL, Bole-Feysot C, Nussbaumer T, Jamet A et al. Peripheral blood vessels are a niche for blood-borne meningococci. Virulence. 2017;8(8):1808–1819. Epub 2017 Nov 27. doi: 10.1080/21505594.2017.1391446

2016

Diesner SC, Bergmayr C, Pfitzner B, Assmann V, Krishnamurthy D, Starkl P et al. A distinct microbiota composition is associated with protection from food allergy in an oral mouse immunization model. Clinical Immunology. 2016 Dec;173:10–18. doi: 10.1016/j.clim.2016.10.009
Eder T, Grebien F, Rattei T. NVT: a fast and simple tool for the assessment of RNA-Seq normalization strategies. Bioinformatics. 2016 Aug 11;32(23):3682-3684. doi: 10.1093/bioinformatics/btw521
Weinmaier T, Platzer A, Frank J, Hellinger HJ, Tischler P, Rattei T. ConsPred - a rule-based (re-)annotation framework for prokaryotic genomes. Bioinformatics. 2016 Jul 4;32(21):3327-3329. doi: 10.1093/bioinformatics/btw393
Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B et al. Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies. Biotechnology for Biofuels. 2016 Jun 7;9:121. 121. doi: 10.1186/s13068-016-0534-x
Turaev D, Rattei T. High definition for systems biology of microbial communities: metagenomics gets genome-centric and strain-resolved. Current Opinion in Biotechnology. 2016 Jun;39:174-181. doi: 10.1016/j.copbio.2016.04.011
Bulat T, Smidak R, Sialana FJ, Jung G, Rattei T, Bilban M et al. Transcriptomic and Proteomic Analysis of Arion vulgaris-Proteins for Probably Successful Survival Strategies? PLoS ONE. 2016 Mar;11(3):e0150614. doi: 10.1371/journal.pone.0150614
Maixner F, Krause-Kyora B, Turaev D, Herbig A, Hoopmann MR, Hallows JL et al. The 5300-year-old Helicobacter pylori genome of the Iceman. Science. 2016 Jan 8;351(6269):162-165. doi: 10.1126/science.aad2545
Eichinger V, Nussbaumer T, Platzer A, Jehl MA, Arnold R, Rattei T. EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. Nucleic Acids Research. 2016 Jan 4;44(D1):D669–D674. doi: 10.1093/nar/gkv1269
Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC et al. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Research. 2016 Jan 4;44(D1):D286–D293. doi: 10.1093/nar/gkv1248
Capel E, Zomer AL, Nussbaumer T, Bole C, Izac B, Frapy E et al. Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization. mBio. 2016;7(4):e01173-16. doi: 10.1128/mBio.01173-16
Laffy PW, Wood-Charlson EM, Turaev D, Weynberg KD, Botté ES, van Oppen MJH et al. HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts. Frontiers in Microbiology. 2016;7:822. doi: 10.3389/fmicb.2016.00822
Showing entries 81 - 100 out of 166