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Showing entries 101 - 120 out of 162

2015

Muller C, Cacaci M, Sauvageot N, Sanguinetti M, Rattei T, Eder T et al. The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice. PLoS ONE. 2015 May 15;10(5):e0126143. 0126143. doi: 10.1371/journal.pone.0126143
Sheibani-Tezerji R, Naveed M, Jehl M-A, Sessitsch A, Rattei T, Mitter B. The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements. Frontiers in Microbiology. 2015 May 12;6:440. 440. doi: 10.3389/fmicb.2015.00440
Stempfhuber B, Engel M, Fischer D, Neskovic-Prit G, Wubet T, Schoening I et al. pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils. Microbial Ecology: an international journal. 2015 May;69(4):879-883. Epub 2014 Dec 12. doi: 10.1007/s00248-014-0548-5
Müller A, Kjeldsen KU, Rattei T, Pester M, Loy A. Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases. The ISME Journal: multidisciplinary journal of microbial ecology. 2015 May;9(5):1152-1165. Epub 2014 Oct 24. doi: 10.1038/ismej.2014.208
Weinmaier T, Hoser J, Eck S, Kaufhold I, Shima K, Strom TM et al. Genomic factors related to tissue tropism in Chlamydia pneumoniae infection. BMC Genomics. 2015 Apr 7;16:268. doi: 10.1186/s12864-015-1377-8
Gruber-Dorninger C, Pester M, Kitzinger K, Savio DF, Loy A, Rattei T et al. Functionally relevant diversity of closely related Nitrospira in activated sludge. The ISME Journal: multidisciplinary journal of microbial ecology. 2015 Mar 1;9:643-655. doi: 10.1038/ismej.2014.156
Sana TG, Baumann C, Merdes A, Soscia C, Rattei T, Hachani A et al. Internalization of Pseudomonas aeruginosa Strain PAO1 into Epithelial Cells Is Promoted by Interaction of a T6SS Effector with the Microtubule Network. mBio. 2015;6(3):e00712-15. doi: 10.1128/mBio.00712-15
Sheibani-Tezerji R, Rattei T, Sessitsch A, Trognitz F, Mitter B. Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress. mBio. 2015;6(5):1-11. e00621-15. doi: 10.1128/mBio.00621-15

2014

Domman D, Collingro A, Lagkouvardos I, Gehre L, Weinmaier T, Rattei T et al. Massive Expansion of Ubiquitination-Related Gene Families within the Chlamydiae. Molecular Biology and Evolution. 2014 Nov;31(11):2890-2904. doi: 10.1093/molbev/msu227
Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S et al. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environmental Microbiology. 2014 Oct;16(10):3055-3071. Epub 2013 Nov 8. doi: 10.1111/1462-2920.12300
Janezic S, Indra A, Rattei T, Weinmaier T, Rupnik M. Recombination Drives Evolution of the Clostridium difficile 16S-23S rRNA Intergenic Spacer Region. PLoS ONE. 2014 Sep 15;9(9):e106545. e106545. doi: 10.1371/journal.pone.0106545
Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B et al. A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes. PLoS ONE. 2014 Sep 10;9(9):e106707. e106707. doi: 10.1371/journal.pone.0106707
Kirchner S, Weinmaier T, Rattei T, Sattmann H, Kruckenhauser L. Characterization of 19 new microsatellite loci for the Omani barb Garra barreimiae from 454 sequences. BMC research notes. 2014 Aug 12;7(1):522. 522. doi: 10.1186/1756-0500-7-522
Marz M, Beerenwinkel N, Drosten C, Fricke M, Frishman D, Hofacker IL et al. Challenges in RNA virus bioinformatics. Bioinformatics. 2014 Jul 1;30(13):1793-1799. doi: 10.1093/bioinformatics/btu105
Walker A, Pfitzner B, Neschen S, Kahle M, Harir M, Lucio M et al. Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet. The ISME Journal: multidisciplinary journal of microbial ecology. 2014 Jun 6;8(12):2380–2396. doi: 10.1038/ismej.2014.79
Behrens S, Widder S, Mannala GK, Qing X, Madhugiri R, Kefer N et al. Ultra deep sequencing of Listeria monocytogenes sRNA transcriptome revealed new antisense RNAs. PLoS ONE. 2014 Feb 3;9(2):e83979. e83979. doi: 10.1371/journal.pone.0083979
Arnold R, Goldenberg F, Mewes H-W, Rattei T. SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage. Nucleic Acids Research. 2014 Jan 1;42(D1):D279-D284. doi: 10.1093/nar/gkt970
Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J et al. eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Research. 2014 Jan;42(D1):D231-D239. doi: 10.1093/nar/gkt1253
Lagkouvardos I, Weinmaier T, Lauro FM, Cavicchioli R, Rattei T, Horn M. Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae. The ISME Journal: multidisciplinary journal of microbial ecology. 2014 Jan;8(1):115-25. doi: 10.1038/ismej.2013.142
Lagkouvardos I, Jehl M-A, Rattei T, Horn M. Signature protein of the PVC superphylum. Applied and Environmental Microbiology. 2014 Jan;80(2):440-445. doi: 10.1128/AEM.02655-13
Showing entries 101 - 120 out of 162