Publications

Stephan R, Lehner A, Tischler P, Rattei T. Complete Genome Sequence of Cronobacter turicensis LMG 23827, a Food-Borne Pathogen Causing Deaths in Neonates. Journal of Bacteriology. 2011;193(1):309-310. doi: 10.1128/JB.01162-10

Jehl MA, Arnold R, Rattei T. Effective-a database of predicted secreted bacterial proteins. Nucleic Acids Research. 2011;39(Suppl. 1):591-595. doi: 10.1093/nar/gkq1154

Nuk MR, Reisner A, Neuwirth M, Schilcher K, Arnold R, Jehl MA et al. Functional analysis of the finO distal region of plasmid R1. Plasmid. 2011;65(2):159-168. doi: 10.1016/j.plasmid.2010.12.002

Bergmann F, Selesi D, Weinmaier T, Tischler P, Rattei T, Meckenstock R. Genomic insights into the metabolic potential of the polycyclic aromatic hydrocarbon degrading sulfate-reducing Deltaproteobacterium N47. Environmental Microbiology. 2011;13(5):1125-1137. doi: 10.1111/j.1462-2920.2010.02391.x

Mewes HW, Ruepp A, Theis F, Rattei T , Rattei T, Walter M et al. MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Research. 2011;39(Supl. 1):220-224. doi: 10.1093/nar/gkq1157

Shima K, Coopmeiners J, Matthias K, Solbach W, Rattei T, Rupp J. Phenotypic characteristics of Chlamydia pneumoniae isolated from different origins. International Journal of Medical Microbiology. 2011;301(47):52-52.

Fuchs TM, Brandt K, Starke M, Rattei T. Shotgun sequencing of Yersinia enterocolitica strain W22703 (biotype 2, serotype O:9): genomic evidence for oscillation between invertebrates and mammals. BMC Genomics. 2011;12. doi: 10.1186/1471-2164-12-168

Lücker S, Wagner M, Maixner F, Pelletier E, Koch H, Vacherie B et al. A Nitrospira metagenome illuminates the physiology and evolution of globally important nitrite-oxidizing bacteria. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 2010;107(30):13479-13484. doi: 10.1073/pnas.1003860107

Selesi D, Jehmlich N, von Bergen M, Schmidt F, Rattei T, Tischler P et al. Combined genomic and proteomic approaches identify gene clusters involved in anaerobic 2-methylnaphthalene degradation in the sulfate-reducing enrichment culture N47. Journal of Bacteriology. 2010;192(1):295-306.

Spang A, Hatzenpichler R, Brochier-Armanet C, Rattei T, Tischler P, Spieck E et al. Distinct gene set in two different lineages of ammonia-oxidizing archaea supports the phylum Thaumarchaeota. Trends in Microbiology. 2010;18(8):331-340. doi: 10.1016/j.tim.2010.06.003

Yu Z, Haberer G, Matthes M, Rattei T, Mayer KFX, Gierl A et al. Impact of natural genetic variation on the transcriptome of autotetraploid Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 2010;107(41):17809-17814. doi: 10.1073/pnas.1000852107

Kriehuber T, Rattei T, Weinmaier T, Bepperling A, Haslbeck M, Buchner J. Independent evolution of the core domain and its flanking sequences in small heat shock proteins. The FASEB Journal. 2010;24(10):3633-3642. doi: 10.1096/fj.10-156992

Lang S, Gruber K, Mihajlovic S, Arnold R, Gruber CJ, Steinlechner S et al. Molecular recognition determinants for type IV secretion of diverse families of conjugative relaxases. Molecular Microbiology. 2010;78(6):1539-1555. doi: 10.1111/j.1365-2958.2010.07423.x

Rattei T, Tischler P, Götz S, Jehl MA, Hoser J, Arnold R et al. SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters. Nucleic Acids Research. 2010;38(1):223-226. doi: 10.1093/nar/gkp949

Arnold R, Jehl MA, Rattei T. Targeting effectors: the molecular recognition of Type III secreted proteins. Microbes and Infection: a journal on infectious agents and host defenses. 2010;12(5):346-358. doi: 10.1016/j.micinf.2010.02.003

Chapman J, Kirkness EF, Simakov O, Hampson SE, Mitros T, Weinmaier T et al. The dynamic genome of Hydra. Nature. 2010;464(7288):592-596. doi: 10.1038/nature08830

Schmitz-Esser S, Tischler P, Arnold R, Montanaro-Punzengruber J , Wagner M , Rattei T et al. The genome of the amoeba symbiont 'Candidatus Amoebophilus asiaticus' reveals common mechanisms for host cell interaction among amoeba-associated bacteria. Journal of Bacteriology. 2010;192(4):1045-1057. doi: 10.1128/JB.01379-09

Smialowski P, Pagel P, Wong P, Brauner B, Dunger I, Fobo G et al. The Negatome database: a reference set of non-interacting protein pairs. Nucleic Acids Research. 2010;38(1):540-544. doi: 10.1093/nar/gkp1026

Heinz E, Tischler P, Rattei T, Myers G, Wagner M , Horn M. Comprehensive in silico prediction and analysis of chlamydial outer membrane proteins reflects evolution and life style of the Chlamydiae. BMC Genomics. 2009;10(Art. 634). doi: 10.1186/1471-2164-10-634

Loy A, Arnold R, Tischler P, Rattei T , Wagner M , Horn M. probeCheck - A central resource for evaluating oligonucleotide probe coverage and specificity. Environmental Microbiology. 2008;10:2894-2896.