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Showing entries 101 - 120 out of 157
2015
Gruber-Dorninger C, Pester M, Kitzinger K, Savio DF, Loy A, Rattei T et al. Functionally relevant diversity of closely related Nitrospira in activated sludge. The ISME Journal: multidisciplinary journal of microbial ecology. 2015 Mar 1;9:643-655. doi: 10.1038/ismej.2014.156
Sana TG, Baumann C, Merdes A, Soscia C, Rattei T, Hachani A et al. Internalization of Pseudomonas aeruginosa Strain PAO1 into Epithelial Cells Is Promoted by Interaction of a T6SS Effector with the Microtubule Network. mBio. 2015;6(3):e00712-15. doi: 10.1128/mBio.00712-15
Sheibani-Tezerji R, Rattei T, Sessitsch A, Trognitz F, Mitter B. Transcriptome Profiling of the Endophyte Burkholderia phytofirmans PsJN Indicates Sensing of the Plant Environment and Drought Stress. mBio. 2015;6(5):1-11. e00621-15. doi: 10.1128/mBio.00621-15
2014
Domman D, Collingro A, Lagkouvardos I, Gehre L, Weinmaier T, Rattei T et al. Massive Expansion of Ubiquitination-Related Gene Families within the Chlamydiae. Molecular Biology and Evolution. 2014 Nov;31(11):2890-2904. doi: 10.1093/molbev/msu227
Pester M, Maixner F, Berry D, Rattei T, Koch H, Lücker S et al. NxrB encoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizing Nitrospira. Environmental Microbiology. 2014 Oct;16(10):3055-3071. Epub 2013 Nov 8. doi: 10.1111/1462-2920.12300
Janezic S, Indra A, Rattei T, Weinmaier T, Rupnik M. Recombination Drives Evolution of the Clostridium difficile 16S-23S rRNA Intergenic Spacer Region. PLoS ONE. 2014 Sep 15;9(9):e106545. e106545. doi: 10.1371/journal.pone.0106545
Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B et al. A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes. PLoS ONE. 2014 Sep 10;9(9):e106707. e106707. doi: 10.1371/journal.pone.0106707
Kirchner S, Weinmaier T, Rattei T, Sattmann H, Kruckenhauser L. Characterization of 19 new microsatellite loci for the Omani barb Garra barreimiae from 454 sequences. BMC research notes. 2014 Aug 12;7(1):522. 522. doi: 10.1186/1756-0500-7-522
Marz M, Beerenwinkel N, Drosten C, Fricke M, Frishman D, Hofacker IL et al. Challenges in RNA virus bioinformatics. Bioinformatics. 2014 Jul 1;30(13):1793-1799. doi: 10.1093/bioinformatics/btu105
Walker A, Pfitzner B, Neschen S, Kahle M, Harir M, Lucio M et al. Distinct signatures of host-microbial meta-metabolome and gut microbiome in two C57BL/6 strains under high-fat diet. The ISME Journal: multidisciplinary journal of microbial ecology. 2014 Jun 6;8(12):2380–2396. doi: 10.1038/ismej.2014.79
Behrens S, Widder S, Mannala GK, Qing X, Madhugiri R, Kefer N et al. Ultra deep sequencing of Listeria monocytogenes sRNA transcriptome revealed new antisense RNAs. PLoS ONE. 2014 Feb 3;9(2):e83979. e83979. doi: 10.1371/journal.pone.0083979
Arnold R, Goldenberg F, Mewes H-W, Rattei T. SIMAP--the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage. Nucleic Acids Research. 2014 Jan 1;42(D1):D279-D284. doi: 10.1093/nar/gkt970
Powell S, Forslund K, Szklarczyk D, Trachana K, Roth A, Huerta-Cepas J et al. eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Research. 2014 Jan;42(D1):D231-D239. doi: 10.1093/nar/gkt1253
Lagkouvardos I, Weinmaier T, Lauro FM, Cavicchioli R, Rattei T, Horn M. Integrating metagenomic and amplicon databases to resolve the phylogenetic and ecological diversity of the Chlamydiae. The ISME Journal: multidisciplinary journal of microbial ecology. 2014 Jan;8(1):115-25. doi: 10.1038/ismej.2013.142
Lagkouvardos I, Jehl M-A, Rattei T, Horn M. Signature protein of the PVC superphylum. Applied and Environmental Microbiology. 2014 Jan;80(2):440-445. doi: 10.1128/AEM.02655-13
Probst AJ, Weinmaier T, Raymann K, Perras A, Emerson JB, Rattei T et al. Biology of a widespread uncultivated archaeon that contributes to carbon fixation in the subsurface. Nature Communications. 2014;5:5497. doi: 10.1038/ncomms6497
Tasara T, Weinmaier T, Klumpp J, Rattei T, Stephan R. Complete Genome Sequence of Listeria monocytogenes Lm60, a Strain with an Enhanced Cold Adaptation Capacity. Genome Announcements. 2014;2(6):e01248-14. doi: 10.1128/genomeA.01248-14
Hanak A-M, Nagler M, Weinmaier T, Sun X, Fragner L, Schwab C et al. Draft Genome Sequence of the Growth-Promoting Endophyte Paenibacillus sp. P22, Isolated from Populus. Genome Announcements. 2014;2(2):e00276-14. e00276-14. Epub 2014 Apr 10. doi: 10.1128/genomeA.00276-14
Maixner F, Thomma A, Cipollini G, Widder S, Rattei T, Zink A. Metagenomic analysis reveals presence of Treponema denticola in a tissue biopsy of the Iceman. PLoS ONE. 2014;9(6):e99994. e99994. doi: 10.1371/journal.pone.0099994
2013
Eme L, Reigstad LJ, Spang A, Lanzen A, Weinmaier T, Rattei T et al. Metagenomics of Kamchatkan hot spring filaments reveal two new major (hyper)thermophilic lineages related to Thaumarchaeota. Research in Microbiology. 2013 Jun;164(5):425-438. doi: 10.1016/j.resmic.2013.02.006
Showing entries 101 - 120 out of 157