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Showing entries 81 - 100 out of 157

2016

Diesner SC, Bergmayr C, Pfitzner B, Assmann V, Krishnamurthy D, Starkl P et al. A distinct microbiota composition is associated with protection from food allergy in an oral mouse immunization model. Clinical Immunology. 2016 Dec;173:10–18. doi: 10.1016/j.clim.2016.10.009
Eder T, Grebien F, Rattei T. NVT: a fast and simple tool for the assessment of RNA-Seq normalization strategies. Bioinformatics. 2016 Aug 11;32(23):3682-3684. doi: 10.1093/bioinformatics/btw521
Weinmaier T, Platzer A, Frank J, Hellinger H-J, Tischler P, Rattei T. ConsPred - a rule-based (re-)annotation framework for prokaryotic genomes. Bioinformatics. 2016 Jul 4;32(21):3327-3329. doi: 10.1093/bioinformatics/btw393
Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B et al. Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies. Biotechnology for Biofuels. 2016 Jun 7;9:121. 121. doi: 10.1186/s13068-016-0534-x
Turaev D, Rattei T. High definition for systems biology of microbial communities: metagenomics gets genome-centric and strain-resolved. Current Opinion in Biotechnology. 2016 Jun;39:174-181. doi: 10.1016/j.copbio.2016.04.011
Bulat T, Smidak R, Sialana FJ, Jung G, Rattei T, Bilban M et al. Transcriptomic and Proteomic Analysis of Arion vulgaris-Proteins for Probably Successful Survival Strategies? PLoS ONE. 2016 Mar;11(3):e0150614. doi: 10.1371/journal.pone.0150614
Maixner F, Krause-Kyora B, Turaev D, Herbig A, Hoopmann MR, Hallows JL et al. The 5300-year-old Helicobacter pylori genome of the Iceman. Science. 2016 Jan 8;351(6269):162-165. doi: 10.1126/science.aad2545
Eichinger V, Nussbaumer T, Platzer A, Jehl M-A, Arnold R, Rattei T. EffectiveDB-updates and novel features for a better annotation of bacterial secreted proteins and Type III, IV, VI secretion systems. Nucleic Acids Research. 2016 Jan 4;44(D1):D669–D674. doi: 10.1093/nar/gkv1269
Huerta-Cepas J, Szklarczyk D, Forslund K, Cook H, Heller D, Walter MC et al. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences. Nucleic Acids Research. 2016 Jan 4;44(D1):D286–D293. doi: 10.1093/nar/gkv1248
Capel E, Zomer AL, Nussbaumer T, Bole C, Izac B, Frapy E et al. Comprehensive Identification of Meningococcal Genes and Small Noncoding RNAs Required for Host Cell Colonization. mBio. 2016;7(4):e01173-16. doi: 10.1128/mBio.01173-16
Laffy PW, Wood-Charlson EM, Turaev D, Weynberg KD, Botté ES, van Oppen MJH et al. HoloVir: A Workflow for Investigating the Diversity and Function of Viruses in Invertebrate Holobionts. Frontiers in Microbiology. 2016;7:822. doi: 10.3389/fmicb.2016.00822
Greuter D, Loy A, Horn M, Rattei T. probeBase-an online resource for rRNA-targeted oligonucleotide probes and primers: New features 2016. Nucleic Acids Research. 2016;44(D1):D586-D589. Epub 2015 Nov 19. doi: 10.1093/nar/gkv1232

2015

Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M et al. Complete nitrification by Nitrospira bacteria. Nature. 2015 Dec 24;528(7583):504–509. doi: 10.1038/nature16461
Weinmaier T, Probst AJ, La Duc MT, Ciobanu D, Cheng J-F, Ivanova N et al. A viability-linked metagenomic analysis of cleanroom environments: eukarya, prokaryotes, and viruses. Microbiome. 2015 Dec 8;3:62. 62. doi: 10.1186/s40168-015-0129-y
Feldbauer R, Schulz F, Horn M, Rattei T. Prediction of microbial phenotypes based on comparative genomics. BMC Bioinformatics. 2015 Oct 2;16 (14):S1. doi: 10.1186/1471-2105-16-S14-S1
Muller C, Cacaci M, Sauvageot N, Sanguinetti M, Rattei T, Eder T et al. The Intraperitoneal Transcriptome of the Opportunistic Pathogen Enterococcus faecalis in Mice. PLoS ONE. 2015 May 15;10(5):e0126143. 0126143. doi: 10.1371/journal.pone.0126143
Sheibani-Tezerji R, Naveed M, Jehl M-A, Sessitsch A, Rattei T, Mitter B. The genomes of closely related Pantoea ananatis maize seed endophytes having different effects on the host plant differ in secretion system genes and mobile genetic elements. Frontiers in Microbiology. 2015 May 12;6:440. 440. doi: 10.3389/fmicb.2015.00440
Stempfhuber B, Engel M, Fischer D, Neskovic-Prit G, Wubet T, Schoening I et al. pH as a Driver for Ammonia-Oxidizing Archaea in Forest Soils. Microbial Ecology: an international journal. 2015 May;69(4):879-883. Epub 2014 Dec 12. doi: 10.1007/s00248-014-0548-5
Müller A, Kjeldsen KU, Rattei T, Pester M, Loy A. Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi) sulfite reductases. The ISME Journal: multidisciplinary journal of microbial ecology. 2015 May;9(5):1152-1165. Epub 2014 Oct 24. doi: 10.1038/ismej.2014.208
Weinmaier T, Hoser J, Eck S, Kaufhold I, Shima K, Strom TM et al. Genomic factors related to tissue tropism in Chlamydia pneumoniae infection. BMC Genomics. 2015 Apr 7;16:268. doi: 10.1186/s12864-015-1377-8
Showing entries 81 - 100 out of 157