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Showing entries 21 - 40 out of 157
2021
Majek P, Lueftinger L, Beisken S, Rattei T, Materna A. Genome-Wide Mutation Scoring for Machine-Learning-Based Antimicrobial Resistance Prediction. International Journal of Molecular Sciences. 2021 Dec 2;22(23):13049. doi: 10.3390/ijms222313049
Flieder M, Buongiorno J, Herbold CW, Hausmann B, Rattei T, Lloyd KG et al. Novel taxa of Acidobacteriota implicated in seafloor sulfur cycling. The ISME Journal. 2021 Nov 1;15(11):3159-3180. Epub 2021 May 12. doi: 10.1038/s41396-021-00992-0
Granehall L, Huang KD, Tett A, Manghi P, Paladin A, O'Sullivan N et al. Metagenomic analysis of ancient dental calculus reveals unexplored diversity of oral archaeal Methanobrevibacter. Microbiome. 2021 Sep 30;9(1):197. doi: 10.1186/s40168-021-01132-8
Tett A, Pasolli E, Masetti G, Ercolini D, Segata N. Prevotella diversity, niches and interactions with the human host. Nature Reviews. Microbiology. 2021 Sep 1;19(9):585–599. Epub 2021 May 28. doi: 10.1038/s41579-021-00559-y
Hanson BT, Dimitri Kits K, Löffler J, Burrichter AG, Fiedler A, Denger K et al. Sulfoquinovose is a select nutrient of prominent bacteria and a source of hydrogen sulfide in the human gut. The ISME Journal. 2021 Sep 1;15(9):2779-2791. Epub 2021 Mar 31. doi: 10.1038/s41396-021-00968-0
Lueftinger L, Ferreira I, Frank BJH, Beisken S, Weinberger J, von Haeseler A et al. Predictive Antibiotic Susceptibility Testing by Next-Generation Sequencing for Periprosthetic Joint Infections: Potential and Limitations. Biomedicines. 2021 Jul 29;9(8):910. doi: 10.3390/biomedicines9080910
Wasmund K, Pelikan C, Schintlmeister A, Wagner M, Watzka M, Richter A et al. Genomic insights into diverse bacterial taxa that degrade extracellular DNA in marine sediments. Nature Microbiology. 2021 Jul;6(7):885-898. Epub 2021 Jun 14. doi: 10.1038/s41564-021-00917-9
Gerner SM, Graf AB, Rattei T. Tamock: simulation of habitat-specific benchmark data in metagenomics. BMC Bioinformatics. 2021 May 1;22(1):227. Epub 2021 May 1. doi: 10.1186/s12859-021-04154-z
Lüftinger L, Majek P, Beisken S, Rattei T, Posch AE. Learning From Limited Data: Towards Best Practice Techniques for Antimicrobial Resistance Prediction From Whole Genome Sequencing Data. Frontiers in Cellular and Infection Microbiology. 2021 Feb 15;11:610348. doi: 10.3389/fcimb.2021.610348
Walliser B, Lucaciu CR, Molitor C, Marinovic S, Nitarska DA, Aktas D et al. Dahlia variabilis cultivar 'Seattle' as a model plant for anthochlor biosynthesis. Plant Physiology and Biochemistry. 2021 Feb;159:193-201. Epub 2020 Dec 17. doi: 10.1016/j.plaphy.2020.12.016
2020
Feldbauer R, Gosch L, Lüftinger L, Hyden P, Flexer A, Rattei T. DeepNOG: Fast and accurate protein orthologous group assignment. Bioinformatics. 2020 Dec 1;36(22-23):5304-5312. doi: 10.1093/bioinformatics/btaa1051
Steiner PA, Geijo J, Fadeev E, Obiol A, Sintes E, Rattei T et al. Functional Seasonality of Free-Living and Particle-Associated Prokaryotic Communities in the Coastal Adriatic Sea. Frontiers in Microbiology. 2020 Nov 16;11:584222. doi: 10.3389/fmicb.2020.584222
Pascelli C, Laffy PW, Botté E, Kupresanin M, Rattei T, Lurgi M et al. Viral ecogenomics across the Porifera. Microbiome. 2020 Oct 2;8(1):144. Epub 2020 Oct 2. doi: 10.1186/s40168-020-00919-5
Herrera P, Schuster L, Wentrup C, König L, Kempinger T, Na H et al. Molecular causes of an evolutionary shift along the parasitism-mutualism continuum in a bacterial symbiont. Proceedings of the National Academy of Sciences of the United States of America (PNAS). 2020 Sep 1;117(35):21658-21666. Epub 2020 Aug 19. doi: 10.1073/pnas.2005536117
Esteves FG, Dos Santos-Pinto JRA, Ferro M, Sialana FJ, Smidak R, Rares LC et al. Revealing the Venomous Secrets of the Spider's Web. Journal of Proteome Research. 2020 Aug 7;19(8):3044-3059. doi: 10.1021/acs.jproteome.0c00086
Reider SJ, Moosmang S, Tragust J, Trgovec-Greif L, Tragust S, Perschy L et al. Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota-Results from the PAGODA Trial. Nutrients. 2020 Apr 28;12(5):1257. doi: 10.3390/nu12051257
Feldbauer R, Rattei T, Flexer A. scikit-hubness: Hubness Reduction and Approximate Neighbor Search. Journal of Open Source Software. 2020 Jan 17;5(45):1957. doi: 10.21105/joss.01957
2019
Vilperte V, Lucaciu CR, Halbwirth H, Boehm R, Rattei T, Debener T. Hybrid de novo transcriptome assembly of poinsettia (Euphorbia pulcherrima Willd. Ex Klotsch) bracts. BMC Genomics. 2019 Nov 27;20(1):900. 900. doi: 10.1186/s12864-019-6247-3
Maixner F, Thorell K, Granehäll L, Linz B, Moodley Y, Rattei T et al. Helicobacter pylori in ancient human remains. World journal of gastroenterology. 2019 Nov 14;25(42):6289-6298. doi: 10.3748/wjg.v25.i42.6289
Tett A, Huang KD, Asnicar F, Fehlner-Peach H, Pasolli E, Karcher N et al. The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations. Cell Host & Microbe. 2019 Nov 13;26(5):666-679.e7. Epub 2019 Sep 24. doi: 10.1016/j.chom.2019.08.018