Univ. Prof. Dr. Thomas Rattei

 

 

 

 

 

Head of the Division of Computational Systems Biology
Vice-head of the Department of Microbiology and Ecosystem Science

☎ +43 1 4277 91280

thomas.rattei@univie.ac.at 

Thomas Rattei’s work covers a wide spectrum of topics from bioinformatics, genome and metagenome analysis and systems biology. He has long-standing expertise in developing and applying computational methods for the interpretation of large-scale sequence information. The international reputation of his research group triggered their involvement in numerous international (meta-) genome sequencing and analysis consortia.

Thomas’ research activities not only cover individual, project-specific questions but also general problems in bioinformatics, computational infrastructure, and large-scale biological databases. Furthermore, his group develops novel, genome-based computational approaches for studying molecular inter-species interactions, such as between hosts and pathogens, between symbionts, or in microbial ecosystems.

Thomas and his team maintain and develop internationally relevant resources in computational biology, such as the web portals phendb.org, vogdb.org and effectivedb.org for microbial trait prediction, virus orthologous groups and protein families, and bacterial secreted proteins and secretion systems.

Links

Teaching

To explore Thomas' teaching activities at the University of Vienna, visit u:find.

Join the Team

If you are interested in joining the lab, explore open positions here or email Thomas directly.

Group Members

  • Michael Neumayer
  • Alexander Pfundner
  • Michael Predl
  • Roko Sango
  • Lovro Trgovec-Greif

 Publications

Dos Santos-Pinto JRA, Esteves FG, Sialana FJ, Ferro M, Smidak R, Rares LC et al. A proteotranscriptomic study of silk-producing glands from the orb-weaving spiders. Molecular Omics. 2019 Aug 5;15(4):256-270. doi: 10.1039/c9mo00087a

Sialana FJ, Ribeiroda Silva Menegasso A, Smidak R, Hussein AM, Zavadil M, Rattei T et al. Proteome Changes Paralleling the Olfactory Conditioning in the Forager Honey Bee and Provision of a Brain Proteomics Dataset. Proteomics. 2019 Jul;19(13):e1900094. doi: 10.1002/pmic.201900094

Kiening M, Ochsenreiter R, Hellinger H-J, Rattei T, Hofacker I, Frishman D. Conserved Secondary Structures in Viral mRNAs. Viruses. 2019 Apr 29;11(5):401. doi: 10.3390/v11050401

Felkel S, Vogl C, Rigler D, Dobretsberger V, Chowdhary BP, Distl O et al. The horse Y chromosome as an informative marker for tracing sire lines. Scientific Reports. 2019 Apr 15;9(1):6095. doi: 10.1038/s41598-019-42640-w

Mahnert A, Moissl-Eichinger C, Zojer M, Bogumil D, Mizrahi I, Rattei T et al. Man-made microbial resistances in built environments. Nature Communications. 2019 Feb 27;10(1):968. doi: 10.1038/s41467-019-08864-0

Hausmann B, Pelikan C, Rattei T, Loy A, Pester M. Long-Term Transcriptional Activity at Zero Growth of a Cosmopolitan Rare Biosphere Member. mBio. 2019 Feb 12;10(1):e02189-18. doi: 10.1128/mBio.02189-18

Wally N, Schneider M, Thannesberger J, Kastner MT, Bakonyi T, Indik S et al. Plasmid DNA contaminant in molecular reagents. Scientific Reports. 2019 Feb 7;9(1):1652. doi: 10.1038/s41598-019-38733-1

Huerta-Cepas J, Szklarczyk D, Heller D, Hernández-Plaza A, Forslund SK, Cook H et al. eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses. Nucleic Acids Research. 2019 Jan 8;47(D1):D309–D314. gky1085. Epub 2018 Nov 12. doi: 10.1093/nar/gky1085

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M et al. Minimum Information about an Uncultivated Virus Genome (MIUViG). Nature Biotechnology. 2019 Jan 1;37(1):29-37. Epub 2018 Dec 17. doi: 10.1038/nbt.4306

Hannemann L, Lucaciu CR, Sharma S, Rattei T, Mayer KFX, Gierl A et al. A promiscuous beta-glucosidase is involved in benzoxazinoid deglycosylation in Lamium galeobdolon. Phytochemistry. 2018 Dec;156:224-233. Epub 2018 Oct 15. doi: 10.1016/j.phytochem.2018.10.012