Univ. Prof. Dr. Thomas Rattei

 

 

 

 

 

Head of the Division of Computational Systems Biology
Vice-head of the Department of Microbiology and Ecosystem Science

☎ +43 1 4277 91280

thomas.rattei@univie.ac.at 

Thomas Rattei’s work covers a wide spectrum of topics from bioinformatics, genome and metagenome analysis and systems biology. He has long-standing expertise in developing and applying computational methods for the interpretation of large-scale sequence information. The international reputation of his research group triggered their involvement in numerous international (meta-) genome sequencing and analysis consortia.

Thomas’ research activities not only cover individual, project-specific questions but also general problems in bioinformatics, computational infrastructure, and large-scale biological databases. Furthermore, his group develops novel, genome-based computational approaches for studying molecular inter-species interactions, such as between hosts and pathogens, between symbionts, or in microbial ecosystems.

Thomas and his team maintain and develop internationally relevant resources in computational biology, such as the web portals phendb.org, vogdb.org and effectivedb.org for microbial trait prediction, virus orthologous groups and protein families, and bacterial secreted proteins and secretion systems.

Links

Teaching

To explore Thomas' teaching activities at the University of Vienna, visit u:find.

Join the Team

If you are interested in joining the lab, explore open positions here or email Thomas directly.

Group Members

  • Michael Neumayer
  • Alexander Pfundner
  • Michael Predl
  • Roko Sango
  • Lovro Trgovec-Greif

 Publications

Reider SJ, Moosmang S, Tragust J, Trgovec-Greif L, Tragust S, Perschy L et al. Prebiotic Effects of Partially Hydrolyzed Guar Gum on the Composition and Function of the Human Microbiota-Results from the PAGODA Trial. Nutrients. 2020 Apr 28;12(5):1257. doi: 10.3390/nu12051257

Feldbauer R, Rattei T, Flexer A. scikit-hubness: Hubness Reduction and Approximate Neighbor Search. Journal of Open Source Software. 2020 Jan 17;5(45):1957. doi: 10.21105/joss.01957

Vilperte V, Lucaciu CR, Halbwirth H, Boehm R, Rattei T, Debener T. Hybrid de novo transcriptome assembly of poinsettia (Euphorbia pulcherrima Willd. Ex Klotsch) bracts. BMC Genomics. 2019 Nov 27;20(1):900. 900. doi: 10.1186/s12864-019-6247-3

Maixner F, Thorell K, Granehäll L, Linz B, Moodley Y, Rattei T et al. Helicobacter pylori in ancient human remains. World journal of gastroenterology. 2019 Nov 14;25(42):6289-6298. doi: 10.3748/wjg.v25.i42.6289

Tett A, Huang KD, Asnicar F, Fehlner-Peach H, Pasolli E, Karcher N et al. The Prevotella copri Complex Comprises Four Distinct Clades Underrepresented in Westernized Populations. Cell Host & Microbe. 2019 Nov 13;26(5):666-679.e7. Epub 2019 Sep 24. doi: 10.1016/j.chom.2019.08.018

Lucaciu R, Pelikan C, Gerner SM, Zioutis C, Köstlbacher S, Marx H et al. A Bioinformatics Guide to Plant Microbiome Analysis. Frontiers in Plant Science. 2019 Oct 23;10:1313. doi: 10.3389/fpls.2019.01313

Moeller FU, Webster NS, Herbold CW, Behnam F, Domman D, Albertsen M et al. Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical sponge Ianthella basta. Environmental Microbiology. 2019 Oct;21(10):3831-3854. doi: 10.1111/1462-2920.14732

Steiner PA, Mena C, De Corte D, Geijo J, Yokokawa T, Rattei T et al. Highly variable mRNA half-life time within marine bacterial taxa and functional genes. Environmental Microbiology. 2019 Oct;21(10):3873-3884. Epub 2019 Jul 12. doi: 10.1111/1462-2920.14737

Laffy PW, Botté ES, Wood-Charlson EM, Weynberg KD, Rattei T, Webster NS. Thermal stress modifies the marine sponge virome. Environmental Microbiology Reports. 2019 Oct;11(5):690-698. Epub 2019 Jul 8. doi: 10.1111/1758-2229.12782